I’ll be completely honest with you – I used to be that person who rolled my eyes at pumpkin everything come September. But last fall, when my neighbor Jamie (who’s gluten-free and constantly challenging me to create better alternatives) brought over some sad, dense pumpkin cookies from the store, I knew I had to step up my game. That’s how these pumpkin cheesecake cookies were born, and honestly? They’ve completely converted me into a pumpkin person.
These aren’t your typical pumpkin cheesecake cookies – they’re soft, pillowy, and have this incredible cream cheese center that makes them taste like you’re eating actual cheesecake in cookie form.
The first time I made these, Cilantro (my orange tabby) kept trying to steal the cream cheese from the counter – I swear that cat has better taste than most food critics. But I digress. What makes these cookies so special is that perfect marriage between the warm spices of fall and that tangy, creamy cheesecake flavor that just melts in your mouth.
Why These Pumpkin Cheesecake Cookies Work So Well
Trust me on this one – I’ve messed up more cookie recipes than I care to admit. But these pumpkin cheesecake cookies? They’re practically foolproof. The secret is in the balance. Instead of making overly sweet pumpkin cookies that taste like cardboard (we’ve all had them), I created something that feels like taking a bite of actual cheesecake, but in convenient, grab-and-go cookie form.
Your kitchen will smell absolutely incredible while these bake. I’m talking about that perfect blend of cinnamon, nutmeg, and vanilla that makes everyone in the house suddenly appear in the kitchen asking “what’s that amazing smell?”
The Story Behind My Perfect Pumpkin Cheesecake Cookies
During my backpacking trip through Thailand in 2018, I learned that the best desserts have layers of flavor and texture. These pumpkin cheesecake cookies embody that philosophy – the soft, spiced pumpkin base gives you that cozy fall feeling, while the cream cheese creates this luxurious, almost custard-like center that keeps you coming back for more.
I learned this trick the hard way after my first attempt resulted in cookies that were basically pumpkin pancakes in disguise. Don’t worry if your first batch looks a little different than mine – cooking is all about learning from our beautiful disasters.
Essential Tips for Perfect Pumpkin Cheesecake Cookies
Use Real Pumpkin Puree: I know, I know – canned pumpkin is easier, and honestly, I use it sometimes too. But if you have fresh pumpkin puree on hand, these pumpkin cheesecake cookies will taste like fall perfection.
Room Temperature Everything: This is crucial for the cream cheese layer. Cold cream cheese will give you lumpy filling, and nobody wants that. I usually take mine out while I’m having my morning Vietnamese coffee ritual.
Don’t Overbake: These cookies are done when the edges are set but the centers still look slightly soft. They’ll continue cooking on the hot pan, and you want that perfect chewy texture.
Double the Cinnamon: Life’s too short for bland cookies. I always add an extra dash of cinnamon because it makes everything taste more like home.
The Perfect Fall Cookie Recipe
For the Pumpkin Cookie Base:
- 1¾ cups all-purpose flour
- 1 teaspoon baking soda
- ½ teaspoon salt
- 1½ teaspoons ground cinnamon
- ½ teaspoon ground nutmeg
- ¼ teaspoon ground ginger
- ¼ teaspoon ground cloves
- ½ cup unsalted butter, softened
- ½ cup granulated sugar
- ½ cup brown sugar, packed
- 1 large egg
- 1 cup pumpkin puree
- 1 teaspoon vanilla extract
For the Cream Cheese Filling:
- 8 oz cream cheese, softened
- ¼ cup granulated sugar
- 1 large egg yolk
- 1 teaspoon vanilla extract
Instructions:
Step 1: Prep Your Kitchen Preheat your oven to 350°F and line two baking sheets with parchment paper. Trust me, these cookies can stick, and you don’t want to lose any of that creamy goodness to your pan.
Step 2: Make the Cream Cheese Filling In a medium bowl, beat together the softened cream cheese, sugar, egg yolk, and vanilla until smooth and creamy. Set this aside – it’s going to be the star of the show.
Step 3: Create the Cookie Base In a separate bowl, whisk together flour, baking soda, salt, and all those gorgeous fall spices. In your mixer bowl, cream the butter with both sugars until light and fluffy (about 3 minutes). Beat in the egg, then add the pumpkin puree and vanilla.
Step 4: Bring It Together Gradually mix in your flour mixture until just combined. Don’t overmix – we want tender cookies, not tough ones.
Step 5: Assembly Magic Here’s where it gets fun. Scoop about 1½ tablespoons of pumpkin cookie dough onto your prepared baking sheets, spacing them about 2 inches apart. Make a small well in the center of each cookie and fill with about 1 teaspoon of the cream cheese mixture.
Step 6: Bake to Perfection Bake for 12-14 minutes until the edges are set but centers still look slightly soft. Let them cool on the baking sheet for 5 minutes before transferring to a wire rack.
Storage and Serving Suggestions
These cookies are best enjoyed within the first two days, stored in an airtight container in the refrigerator (thanks to that cream cheese filling). But honestly, they never last that long in my house.
They’re perfect with a cup of coffee for an afternoon treat, or pack a couple in your lunch for a midday pick-me-up. I also love serving these at fall gatherings – they’re elegant enough for company but casual enough for a cozy night in.

Make It Your Own
One of my favorite things about this recipe is how adaptable it is. Try adding a handful of mini chocolate chips to the cookie dough, or swirl some caramel into the cream cheese filling for an extra indulgent twist. If you’re feeling adventurous, a pinch of cardamom in the spice mix adds this lovely, unexpected warmth.
For my gluten-free friends like Jamie, I’ve successfully made these using a 1:1 gluten-free flour blend – just add an extra ¼ teaspoon of xanthan gum if your blend doesn’t include it. And if you’re on a keto diet, you might want to check out my simple keto chicken salad for a completely different but equally satisfying treat.
Why These Pumpkin Cheesecake Cookies Will Become Your Fall Favorite
What I love most about these pumpkin cheesecake cookies is how they capture everything perfect about fall baking in one bite. They’re sophisticated enough to impress guests but simple enough to make on a random Tuesday when you need something sweet to brighten your day.
These pumpkin cheesecake cookies have become my go-to fall dessert, and honestly, I think they might just become yours too. Speaking of fall favorites, if you’re loving the pumpkin vibes, you absolutely have to try my pumpkin banana cake recipe – it’s like these cookies’ sophisticated cake cousin that’s perfect for dinner parties.
And if you’re looking for more cozy fall treats that won’t keep you in the kitchen all day, you’ll absolutely love my Maple Pecan Shortbread Bars. They have that same comfort-food vibe but with a completely different flavor profile that’s equally irresistible.
The best part? Unlike my infamous sourdough starter disasters, these cookies are practically mistake-proof. So grab your pumpkin puree, crank up your favorite fall playlist, and let’s get baking. Your kitchen (and your taste buds) will thank you.
What’s your favorite way to enjoy pumpkin season? I’d love to hear about your fall baking adventures in the comments below!

Pumpkin Cheesecake Cookies
Ingredients
Method
- Prep Your Kitchen: Preheat oven to 350°F (175°C). Line two baking sheets with parchment paper.
- Make the Cream Cheese Filling: In a medium bowl, beat together softened cream cheese, ¼ cup sugar, egg yolk, and vanilla until smooth and creamy. Set aside.
- Mix Dry Ingredients: In a separate bowl, whisk together flour, baking soda, salt, cinnamon, nutmeg, ginger, and cloves.
- Create Cookie Base: In a large mixing bowl, cream the softened butter with both sugars until light and fluffy (about 3 minutes). Beat in the egg, then add pumpkin puree and vanilla extract.
- Combine: Gradually mix the flour mixture into the pumpkin mixture until just combined. Don’t overmix.
- Shape and Fill: Scoop 1½ tablespoons of cookie dough onto prepared baking sheets, spacing 2 inches apart. Make a small well in the center of each cookie and fill with 1 teaspoon of cream cheese mixture.
- Bake: Bake for 12-14 minutes until edges are set but centers still look slightly soft.
- Cool: Let cookies cool on baking sheet for 5 minutes before transferring to a wire rack.
Notes
- Room Temperature is Key: Make sure your cream cheese and butter are properly softened for the best texture
- Don’t Overbake: These cookies continue cooking on the hot pan, so slightly underbaked is perfect
- Storage: Store in refrigerator for up to 5 days due to the cream cheese filling
- Make-Ahead: Cookie dough can be made 1 day ahead and chilled
- Gluten-Free Option: Use 1:1 gluten-free flour blend and add ¼ teaspoon xanthan gum if not included
- Calories: 165
- Fat: 6g
- Saturated Fat: 4g
- Cholesterol: 35mg
- Sodium: 145mg
- Carbohydrates: 26g
- Fiber: 1g
- Sugar: 16g
- Protein: 3g